1. Splinkerette PCR - Methods [Splinkerette PCR Methods - Digestion to remove genomic DNA fragments with splinkerette adaptor ligated on both ends] Splinkerette adaptor ligation : 10x NEB buffer : EcoRV(20 U/microL) : Acetylated BSA (10 mg/mL) : Double distilled Water Mixture: sterile_microfuge_tube2.contents, neb3, ecorv, bsa, water N Target Ratio L 5 40:10:1:1:48 100 Citation: ################################# @Article{ NatProtSplinkerettePCR2009, TITLE = "{A high-throughput splinkerette-PCR method for the isolation and sequencing of retroviral insertion sites}", AUTHOR = "Anthony G Uren and Harald Mikkers and Jaap Kool and Louise van der Weyden and Anders H Lund and Catherine H Wilson and Richard Rance and Jos Jonkers and Maarten van Lohuizen and Anton Berns and David J Adams", JOURNAL = "Nature Protocols", YEAR = "2009", VOLUME = "4", NUMBER = "5", PAGES = "789--798" } ################################# 2. Touchdown PCR Mixture: pcr_buffer, mgcl2, template_dna, dntp, f_primer, r_primer, dna_pol, ddw Target Ratio: 5 : 3 : 10 : 5 : 1 : 1 : 0.25 : 24.75 => 500 : 300 : 1000 : 500 : 100 : 100 : 25 : 2475 N Target Ratio L 8 20:12:40:20:4:4:1:99 200 Citation: ################################# @Misc{ webOpenWetWare, author = "{OpenWetWare}", month = "", year = "2009", note = "http://openwetware.org/wiki/Main\_Page", annote = "" } ################################# 3. Methods in Molecular barcodes paper [Methods in Molecular barcodes - PCR of purified products] Mixture: rxn_buffer, datp, dgtp, dttp, dctp, f_primer, r_primer, rxn_tube3.contents, taq, sdw Target Ratio: 1 : 0.2 : 0.2 : 0.2 : 0.2 : 0.5 : 0.5 : 1 : 0.04 : 6.16 => 100 : 20 : 20 : 20 : 20 : 50 : 50 : 100 : 4 : 616 N Target Ratio L 10 50:10:10:10:10:25:25:50:2:313 505 Citations: ################################# @Book{ bookDNAbarcodes2012, title = "{DNA Barcodes: Methods and Protocols}", author = "Ida Lopez and David L. Erickson", publisher = "Humana Press", year = "2012", annote = "" } @Misc{ webOpenWetWare, author = "{OpenWetWare}", month = "", year = "2009", note = "http://openwetware.org/wiki/Main\_Page", annote = "" } ################################# 4. Silver - Restriction Digest Mixture: 700 ng BioBrick vector (BBa_V0002 or Bba_V0100) - 7 L, 1 L 10 x BSA, 1 L 10x buffer, 0.2 L enzyme 1 (20 units/L), 0.2 L enzyme 2 (20 units/L), 0.6 L distilled water = total 10 L Target Ratio: 7 : 1 : 1 : 0.2 : 0.2 : 0.6 => 70 : 10 : 10 : 2 : 2 : 6 N Target Ratio L 6 35:5:5:1:1:3 50 Citation: ################################# @Misc{ webOpenWetWare, author = "{OpenWetWare}", month = "", year = "2009", note = "http://openwetware.org/wiki/Main\_Page", annote = "" } ################################# 5. Blackburn - Yeast Colony PCR Mixture: 2uL 5X Q-solution, 1uL 10X PCR Buffer, 0.2uL dNTPs (10mM each), 0.2uL foward primer (100uM), 0.2uL reverse primer (100uM), 0.1uL Taq, 5.3uL ddH2O Target Ratio: 2 : 1 : 0.2 : 0.2 : 0.2 : 0.1 : 5.3 => 20 : 10 : 2 : 2 : 2 : 1 : 53 N Target Ratio L 7 20:10:2:2:2:1:53 90 Citation: ################################# @Misc{ webOpenWetWare, author = "{OpenWetWare}", month = "", year = "2009", note = "http://openwetware.org/wiki/Main\_Page", annote = "" } ################################# ################################# @Article{ 2009_Microsoft_BioCoder, AUTHOR = "{BioCoder: A Programming Language for Biology Protocols, Microsoft Research India, http://research.microsoft.com/en-us/um/india/projects/biocoder/}", TITLE = "", YEAR = 2009, MONTH = "December", ANNOTE = "" } #################################